March 17, 2002
DNA Computer Cracks 'Traveling Salesman' Problem

A 'DNA computer' has been used for the first time to find the only correct answer from over a million possible solutions to the classic NP-complete computational problem.

Check out the PhysicsWeb article by Katie Pennicott:
‘DNA computer’ cracks code.

Adleman and colleagues chose an 'exponential time' problem, in which each extra variable doubles the amount of computation needed. This is known as an NP-complete problem, and is notoriously difficult to solve for a large number of variables. Other NP-complete problems include the 'travelling salesman' problem - in which a salesman has to find the shortest route between a number of cities - and the calculation of interactions between many atoms or molecules.

Adleman and co-workers expressed their problem as a string of 24 'clauses', each of which specified a certain combination of 'true' and 'false' for three of the 20 variables. The team then assigned two short strands of specially encoded DNA to all 20 variables, representing 'true' and 'false' for each one.

In the experiment, each of the 24 clauses is represented by a gel-filled glass cell. The strands of DNA corresponding to the variables - and their 'true' or 'false' state - in each clause were then placed in the cells...

...According to Adleman and co-workers, their demonstration represents a watershed in DNA computation comparable with the first time that electronic computers solved a complex problem in the 1960s. They are optimistic that such 'molecular computing' could ultimately allow scientists to control biological and chemical systems in the way that electronic computers control mechanical and electrical systems now.

Posted by Lisa at March 17, 2002 04:11 PM | TrackBack
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